Below is the full list of Yokohama City University's partner institutions.
Africa
- Uganda
- Makerere University
- Zambia
- University of Zambia
Americas
- Brazil
- Federal University of Rio Grande do Sul
- Canada
- Huron University College
- Memorial University of Newfoundland
- University of British Columbia
- University of Manitoba
- Université de Montréal
- Mexico
- Universidad de las Américas Puebla
- USA
- La Jolla Institute For Allergy and Immunology
- San Diego State University
- Sanford Burnham Prebys Medical Discovery Institute
- Scripps Institute of Oceanography
- State University of New York at Stony Brook
- St. Cloud State University
- Temple University
- University of California, Irvine
- University of California San Diego
- University of South Carolina Aiken
- University of Southern Maine
- Weber State University
Asia/Middle East
- China
- Beijing Normal University
- Shanghai Jiao Tong University
- Shanghai Normal University
- Indonesia
- Hasanuddin University
- Malaysia
- Universiti Sains Malaysia
- Philippines
- University of the Philippines
- South Korea
- Yonsei University
- Gwangju Institute of Science and Technology
- Incheon National University
- Korea University Sejong Campus
- Semyung University
- Sookmyung Women's University
- Singapore
- National University of Singapore
- Taiwan
- National Chengchi University
- National Formosa University
- National Taiwan Normal University
- National Taiwan University of Science & Technology
- Tunghai University
- Thailand
- Chiang Mai University
- Thammasat University
- Ubon Ratchathani University
- Turkey
- Middle East Technical University
- Vietnam
- Foreign Trade University
- Vietnam National University, Ho Chi Minh City
Europe
- Austria
- Universität Wien
- Belgium
- Katholieke Universiteit Leuven
- Université Saint-Louis Bruxelles
- Finland
- University of Oulu
- France
- Assistance Publique - Hôpitaux de Paris (AP-HP)
- Université Jean Moulin Lyon 3
- Paris Descartes University
- Université de Strasbourg
- Germany
- Johann Wolfgang Goethe-Universität Frankfurt am Main
- Ludwig-Maximilians Universität (LMU Munich)
- University of Freiburg, University College Freiburg
- Hungary
- Eötvös Loránd University
- Italy
- Università Ca' Foscari Venezia
- University of Catania
- University of Padua
- Netherlands
- Utrecht University Summer School
- Poland
- Jagiellonian University
- Romania
- University of Bucharest
- Serbia
- University of Belgrade
- Spain
- Complutense University of Madrid
- University of Navarra
- University of Santiago de Compostela
- Sweden
- Halmstad University
- Örebro University, School of Business
- Switzerland
- University of Zurich
- UK
- De Montfort University
- Leeds Trinity University
- Richmond, The American International University in London