Advanced Bioinformatics Practical Course: scRNA-seq Data Analysisのご案内

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FY2021 KYOTEN “Advanced Bioinformatics Practical Course” will cover single cell data analysis in R 4.1 (RStudio, Seurat 4, Monocle 3).  The course will be held online (Zoom) and will be given in English.

Participation in the course requires:
(i) basic familiarity with R / RStudio
(ii) basic understanding of RNA-seq single cell technology
(iii) setting up own computational environment

(instructions are provided)

General Course Info
Format & Language
Zoom / English

YCU students: Free
YCU researchers: 5,000 yen
External students collaborating at YCU KYOTEN: Free
External researchers collaborating at YCU KYOTEN: 5,000 yen
Other external researchers: 7,500 yen

Number of Participants
20 participants (maximum)
(priority will be given to Kyoten collaborators)

Application form
Please complete the online Application Form.

Application deadline
24 December, 2021

Jordan Ramilowski, PhD (YCU/RIKEN IMS)

4 classes for 2 hours/each, 8 hours total
Each class has lecture and practical

Lecture 1: 17 January, 2022, 17:30–19:30
Working with own and public single cell data. Creating and understanding Seurat object

Lecture 2: 31 January, 2022, 17:30–19:30
scRNA-seq data processing in Seurat: QC, normalization, clustering and annotations

Lecture 3: 14 February, 2022, 17:30–19:30
scRNA-seq data integration & differential expression in Seurat

Lecture 4: 28 February, 2022, 17:30–19:30
Introduction to scRNA-seq trajectory analysis using Monocle 3

For more details please refer to: