Advanced Bioinformatics Practical Course: scRNA-seq Data Analysisのご案内

※ 参加申し込みフォームはこちらです。※ 申し込みは終了しました。

FY2021 KYOTEN “Advanced Bioinformatics Practical Course” will cover single cell data analysis in R 4.1 (RStudio, Seurat 4, Monocle 3).  The course will be held online (Zoom) and will be given in English.

Participation in the course requires:
(i) basic familiarity with R / RStudio
(ii) basic understanding of RNA-seq single cell technology
(iii) setting up own computational environment

(instructions are provided)

General Course Info
Format & Language
Zoom / English

YCU students: Free
YCU researchers: 5,000 yen
External students collaborating at YCU KYOTEN: Free
External researchers collaborating at YCU KYOTEN: 5,000 yen
Other external researchers: 7,500 yen

Number of Participants
20 participants (maximum)
(priority will be given to Kyoten collaborators)

Application form
Please complete the online Application Form. ※ 申し込みは終了しました。

Application deadline
24 December, 2021

Jordan Ramilowski, PhD (YCU/RIKEN IMS)

4 classes for 2 hours/each, 8 hours total
Each class has lecture and practical

Lecture 1: 17 January, 2022, 17:30–19:30
Working with own and public single cell data. Creating and understanding Seurat object

Lecture 2: 31 January, 2022, 17:30–19:30
scRNA-seq data processing in Seurat: QC, normalization, clustering and annotations

Lecture 3: 14 February, 2022, 17:30–19:30
scRNA-seq data integration & differential expression in Seurat

Lecture 4: 28 February, 2022, 17:30–19:30
Introduction to scRNA-seq trajectory analysis using Monocle 3

For more details please refer to: (開催が終了しましたので、ポスターの閲覧は終了しました)