{"id":218,"date":"2019-11-05T16:49:15","date_gmt":"2019-11-05T07:49:15","guid":{"rendered":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/?page_id=218"},"modified":"2024-11-30T11:13:55","modified_gmt":"2024-11-30T02:13:55","slug":"mori-research","status":"publish","type":"page","link":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori-research\/","title":{"rendered":"Research overview &#8211; Dr. Jiro F. Mori"},"content":{"rendered":"\n<h3 class=\"has-light-green-cyan-background-color has-background wp-block-heading\"><strong>Current Research<\/strong><\/h3>\n\n\n\n<p>In the Mori Lab @YCU, several research projects in microbial ecology, microbial genomics, geomicrobiology, and bioremediation studies have got under way.<\/p>\n\n\n\n<p>Current Research Interests:<br>(1) Petroleum hydrocarbon-degrading (soil\/marine) microbial assemblages<br>(2) Interactions between marine microorganisms and plastic debris<br>(3) Iron-\/manganese-oxidizing microorganisms in metal-rich groundwater outflow<br>(4) Filterable (ultra-small) microorganisms in coastal environments<\/p>\n\n\n\n<p>\u4eca\u8208\u5473\u304c\u3042\u308b\u3053\u3068\uff1a<br>(1) \u77f3\u6cb9\u7cfb\u70ad\u5316\u6c34\u7d20\u3092\u751f\u5206\u89e3\u3059\u308b\uff08\u571f\u58cc\/\u6d77\u6d0b\uff09\u5fae\u751f\u7269\u7fa4\u96c6<br>(2) \u6d77\u6d0b\u5fae\u751f\u7269\u3068\u30d7\u30e9\u30b9\u30c1\u30c3\u30af\u306e\u95a2\u4fc2<br>(3) \u6de1\u6c34\u74b0\u5883\u4e2d\u306e\u9244\/\u30de\u30f3\u30ac\u30f3\u9178\u5316\u5fae\u751f\u7269\u306e\u751f\u614b\u3068\u305d\u306e\u5fdc\u7528<br>(4) \u9664\u83cc\u30d5\u30a3\u30eb\u30bf\u30fc\u3092\u901a\u904e\u3059\u308b\uff08\u8d85\u5fae\u5c0f\uff09\u6d77\u6d0b\u5fae\u751f\u7269<br>\u3000\u3000\u3000<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>In-depth genomic characterization of petroleum hydrocarbon-degrading microorganisms<\/strong><\/p>\n<\/blockquote>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"249\" src=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2022\/01\/KK10-highlight-1024x249.png\" alt=\"\" class=\"wp-image-857\" srcset=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2022\/01\/KK10-highlight-1024x249.png 1024w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2022\/01\/KK10-highlight-300x73.png 300w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2022\/01\/KK10-highlight-768x187.png 768w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2022\/01\/KK10-highlight-1536x373.png 1536w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2022\/01\/KK10-highlight.png 2008w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<p>Microorganisms that can degrade petroleum hydrocarbons (alkanes and aromatic hydrocarbons) and utilize them as carbon and energy sources are considered to have acquired and conserve unique functional gene sets which encode specific enzymes that are responsible for bio-transformation of these hydrocarbons in their genomes.<\/p>\n\n\n\n<p>Through complete genome sequencing and comparative genomics analyses, we conduct in-depth genomic characterization of selected petroleum hydrocarbon-degrading microorganisms, for the purpose of identifying key functional genes in their genomes and discovering their novel metabolic potentials.<\/p>\n\n\n\n<p>\u77f3\u6cb9\u306b\u542b\u307e\u308c\u308b\u5404\u7a2e\u70ad\u5316\u6c34\u7d20\uff08\u30a2\u30eb\u30ab\u30f3\u3084\u82b3\u9999\u65cf\u70ad\u5316\u6c34\u7d20\uff09\u3092\u5206\u89e3\u3057\u3001\u70ad\u7d20\u6e90\u30fb\u30a8\u30cd\u30eb\u30ae\u30fc\u6e90\u3068\u3057\u3066\u5229\u7528\u3067\u304d\u308b\u5fae\u751f\u7269\u306f\u3001\u305d\u308c\u3089\u306e\u5206\u89e3\u6a5f\u69cb\u306b\u95a2\u308f\u308b\u7279\u6b8a\u306a\u9175\u7d20\u7fa4\u3092\u30b3\u30fc\u30c9\u3059\u308b\u907a\u4f1d\u5b50\u7fa4\u3092\u7372\u5f97\u3057\u3001\u30b2\u30ce\u30e0\u4e0a\u306b\u4fdd\u6301\u3057\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n<p>\u305d\u308c\u3089\u306e\u5fae\u751f\u7269\u306b\u3064\u3044\u3066\u3001\u6b21\u4e16\u4ee3\u30b7\u30fc\u30b1\u30f3\u30b5\u30fc\u306b\u3088\u308b\u30b2\u30ce\u30e0\u306e\u5b8c\u5168\u89e3\u8aad\u3001\u304a\u3088\u3073\u65e2\u77e5\u306e\u5fae\u751f\u7269\u3068\u306e\u6bd4\u8f03\u30b2\u30ce\u30e0\u89e3\u6790\u3092\u884c\u3046\u3053\u3068\u306b\u3088\u308a\u3001\u6a5f\u80fd\u6027\u907a\u4f1d\u5b50\u7fa4\u306e\u5206\u5e03\u3084\u3001\u65b0\u898f\u306e\u4ee3\u8b1d\u6a5f\u80fd\u7b49\u306b\u3064\u3044\u3066\u8abf\u67fb\u3057\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n<p>Related research articles:<br>Abe et al., <a href=\"https:\/\/journals.asm.org\/doi\/10.1128\/spectrum.01074-24\" target=\"_blank\" rel=\"noreferrer noopener\"><em>Microbiology Spectrum<\/em> (2024)<\/a><br>Kayama et al., <a rel=\"noreferrer noopener\" href=\"https:\/\/journals.asm.org\/doi\/10.1128\/spectrum.03149-22\" target=\"_blank\"><em>Microbiology Spectrum<\/em> (2022)<\/a><br>Mori and Kanaly, <a rel=\"noreferrer noopener\" href=\"https:\/\/journals.asm.org\/doi\/10.1128\/spectrum.02225-21\" target=\"_blank\"><em>Microbiology Spectrum<\/em> (2022)<\/a><br><br>Complete genome announcements:<br>Abe et al., <a rel=\"noreferrer noopener\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1874778723000624\" target=\"_blank\"><em>Marine Genomics<\/em> (2023)<\/a><br>Kayama et al., <a rel=\"noreferrer noopener\" href=\"https:\/\/journals.asm.org\/doi\/10.1128\/mra.00532-22\" target=\"_blank\"><em>Microbiology Resources Announcement<\/em> (2022)<\/a><br>Mori et al., <a rel=\"noreferrer noopener\" href=\"https:\/\/journals.asm.org\/doi\/10.1128\/MRA.00423-21\" target=\"_blank\"><em>Microbiology Resources Announcement<\/em> (2021)<\/a><br>Mori and Kanaly, <a rel=\"noreferrer noopener\" href=\"https:\/\/mra.asm.org\/content\/10\/1\/e01250-20\" target=\"_blank\"><em>Microbiology Resources Announcement<\/em> (2021)<\/a><br><br>Presentations:<br>Mori et al., <em>JSME<\/em>, Hiroshima (2024)<br>Yanagita et al., <em>JSME<\/em>, Hiroshima (2024)<br>Mori et al., <em>ASME\/JSME<\/em>, Hamamatsu (2023)<br>Abe et al., <em>JSME<\/em>, Hamamatsu (2023)<br><br><\/p>\n\n\n\n<p>    <\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>Multispecies petroleum hydrocarbon biodegradation &#8216;ignited&#8217; by pioneering bacteria in a soil bacterial consortium<br><\/strong><\/p>\n<\/blockquote>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter\"><img loading=\"lazy\" decoding=\"async\" width=\"1894\" height=\"512\" src=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2020\/12\/AEM-digest-e1608880901214.png\" alt=\"\" class=\"wp-image-485\"\/><\/figure><\/div>\n\n\n<p>Microorganisms that are capable of biodegrading petroleum hydrocarbons and utilizing them as carbon and energy sources have been attracting interest for their potential roles in bioremediation. In natural environment, cooperative activities of multiple microbial groups are considered to be required to eliminate complex oil pollutant mixtures (alkanes and aromatic hydrocarbons), rather than a single microbial species.<\/p>\n\n\n\n<p>Our lab employs a combined metagenomic functional gene analyses and culture-based characterizations of the metabolic capabilities for the oil-degrading bacterial consortium members, to understand their complex roles and interactions developed during oil exposure.<\/p>\n\n\n\n<p>Our recent study using a diesel fuel-degrading soil bacterial consortium revealed that two pioneering members in the consortium, aromatics-degrading <em>Sphingobium <\/em>and alkane-degrading <em>Pseudomonas<\/em>, were responsible for initiating hydrocarbon biotransformations as well as the creation of specialized niches that were occupied by other bacterial members (co-colonizers). Co-existence of a select few pioneers and a multispecies co-colonizers cohort may be a common trait in natural ecosystems exposed to oil pollution.<\/p>\n\n\n\n<p>\u77f3\u6cb9\u3092\u69cb\u6210\u3059\u308b\u5404\u7a2e\u70ad\u5316\u6c34\u7d20\uff08\u30a2\u30eb\u30ab\u30f3\u3084\u82b3\u9999\u65cf\u70ad\u5316\u6c34\u7d20\uff09\u306e\u591a\u304f\u306f\u3001\u6025\u6027\u6bd2\u6027\u3084\u5909\u7570\u539f\u6027\uff08\u767a\u30ac\u30f3\u6027\uff09\u3092\u6301\u3064\u305f\u3081\u3001\u77f3\u6cb9\u306e\u5927\u898f\u6a21\u306a\u6d41\u51fa\u306f\u5468\u8fba\u306e\u751f\u614b\u7cfb\u306b\u6df1\u523b\u306a\u5f71\u97ff\u3092\u4e0e\u3048\u307e\u3059\u3002\u305d\u3053\u3067\u3001\u77f3\u6cb9\u7cfb\u70ad\u5316\u6c34\u7d20\u3092\u30a8\u30cd\u30eb\u30ae\u30fc\u6e90\u30fb\u70ad\u7d20\u6e90\u3068\u3057\u3066\u5229\u7528\u3057\u3001\u3053\u308c\u3089\u3092\u751f\u5206\u89e3\u3059\u308b\u80fd\u529b\u3092\u6301\u3064\u5fae\u751f\u7269\u304c\u6ce8\u76ee\u3092\u96c6\u3081\u3066\u3044\u307e\u3059\u3002\u8907\u96d1\u306a\u6df7\u5408\u7269\u3067\u3042\u308b\u77f3\u6cb9\u306e\u5b8c\u5168\u306a\u751f\u5206\u89e3\u306e\u305f\u3081\u306b\u306f\u3001\u8907\u6570\u7a2e\u306e\u5fae\u751f\u7269\u306e\u5171\u5b58\u304c\u5fc5\u8981\u3067\u3042\u308b\u3068\u8003\u3048\u3089\u308c\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n<p>\u6211\u3005\u306e\u7814\u7a76\u5ba4\u3067\u306f\u3001\u30e1\u30bf\u30b2\u30ce\u30e0\u89e3\u6790\u306b\u3088\u308b\u5fae\u751f\u7269\u306e\u6a5f\u80fd\u6027\u907a\u4f1d\u5b50\u7fa4\u306e\u89e3\u6790\u3001\u304a\u3088\u3073\u57f9\u990a\u3057\u305f\u5fae\u751f\u7269\u306e\u5897\u6b96\u80fd\u30fb\u4ee3\u8b1d\u7523\u7269\u306e\u5206\u6790\u3068\u3044\u3046\uff12\u3064\u306e\u30a2\u30d7\u30ed\u30fc\u30c1\u306b\u3088\u308a\u3001\u8907\u96d1\u306a\u77f3\u6cb9\u5206\u89e3\u5fae\u751f\u7269\u7fa4\u96c6\u306b\u304a\u3051\u308b\u5404\u5fae\u751f\u7269\u7a2e\u306e\u5f79\u5272\u3084\u76f8\u4e92\u4f5c\u7528\u6a5f\u69cb\u306e\u89e3\u660e\u3092\u76ee\u6307\u3057\u3066\u3044\u307e\u3059\u3002<\/p>\n\n\n\n<p>\u512a\u308c\u305f\u30c7\u30a3\u30fc\u30bc\u30eb\u6cb9\u751f\u5206\u89e3\u80fd\u3092\u6301\u3064\u571f\u58cc\u7d30\u83cc\u7fa4\u96c6\u3092\u7528\u3044\u305f\u6700\u65b0\u306e\u7814\u7a76\u3067\u306f\u3001\u82b3\u9999\u65cf\u5206\u89e3\u7d30\u83cc<em>Sphingobium<\/em>\u5c5e\u3068\u30a2\u30eb\u30ab\u30f3\u5206\u89e3\u7d30\u83cc<em>Pseudomonas<\/em>\u5c5e\u3068\u3044\u3046\uff12\u7fa4\u306e\u300c\u30d1\u30a4\u30aa\u30cb\u30a2\u5fae\u751f\u7269\u300d\u304c\u3044\u3061\u65e9\u304f\u70ad\u5316\u6c34\u7d20\u306e\u5206\u89e3\u3092\u59cb\u3081\u3001\u305d\u306e\u98df\u3079\u6b8b\u3057\u3084\u4ee3\u8b1d\u7523\u7269\u306b\u4f9d\u5b58\u3057\u3066\u4ed6\u306e\u591a\u304f\u306e\u7d30\u83cc\u7a2e\u304c\u5897\u6b96\u3057\u3066\u3044\u305f\u3053\u3068\u3092\u8a3c\u660e\u3057\u307e\u3057\u305f\u3002\u3053\u3046\u3057\u305f\u3001\u5c11\u6570\u306e\u30d1\u30a4\u30aa\u30cb\u30a2\u5fae\u751f\u7269\u306b\u652f\u3048\u3089\u308c\u305f\u5fae\u751f\u7269\u751f\u614b\u7cfb\u304c\u3001\u77f3\u6cb9\u6c5a\u67d3\u74b0\u5883\u306b\u304a\u3044\u3066\u666e\u904d\u7684\u306b\u69cb\u7bc9\u3055\u308c\u3066\u3044\u308b\u306e\u304b\u3082\u3057\u308c\u307e\u305b\u3093\u3002<\/p>\n\n\n\n<p>Related research article:<br>Mori and Kanaly, <a rel=\"noopener noreferrer\" href=\"https:\/\/aem.asm.org\/content\/87\/1\/e02268-20\" target=\"_blank\"><em>Applied and Environmental Microbiology<\/em> (2020)<\/a><br><\/p>\n\n\n\n<p>Presentations:<br>Mori et al., <em>JSME<\/em>, Sapporo (2022)<br>Kayama et al., <em>JSME<\/em>, Niigata (2021)<br>Mori et al., <em>JSME<\/em>, Yamanashi (2019)<br><br>\u3000\u3000\u3000<\/p>\n\n\n\n<p>    <\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>Ecology of freshwater Mn-oxidizing microorganisms; evaluation of their potentials for water purification<br><\/strong><\/p>\n<\/blockquote>\n\n\n\n<p>A variety of microorganisms (bacteria and fungi) have the ability to oxidize dissolved Mn(II) and precipitate it as Mn(III\/IV) oxides. The Mn oxides produced by these microorganisms, the so-called Biogenic Mn Oxides (BMOs), are known to adsorb other heavy metals, and therefore are considered to have a potential to clean-up toxic heavy metal pollutants in water environments.<\/p>\n\n\n\n<p>Our current mission is to characterize the biomineralization and bioremediation potentials of a new Mn(II)-oxidizing fungal isolate, which was obtained from a Mn(II)-rich freshwater outflow located near the YCU campus.<\/p>\n\n\n\n<p>\u5fae\u751f\u7269\u304c\u6c34\u4e2d\u306eMn(II)\u3092\u9178\u5316\u3057Mn(III\/IV)\u9178\u5316\u7269\u3068\u3057\u3066\u6c88\u6bbf\u3055\u305b\u308b\u80fd\u529b\u306f\u3001\u591a\u69d8\u306a\u7cfb\u7d71\u306e\u7d30\u83cc\u30fb\u771f\u83cc\u3067\u5831\u544a\u3055\u308c\u3066\u3044\u307e\u3059\u3002\u5fae\u751f\u7269\u304c\u7523\u751f\u3059\u308bMn(III\/IV) \u9178\u5316\u7269 (Biogenic Mn Oxides, BMOs)\u306f\u4ed6\u306e\u91cd\u91d1\u5c5e\u3092\u5438\u7740\u3059\u308b\u3053\u3068\u304b\u3089\u3001\u30de\u30f3\u30ac\u30f3\u9178\u5316\u5fae\u751f\u7269\u304c\u6c34\u4e2d\u306e\u6709\u6bd2\u306a\u91cd\u91d1\u5c5e\u3092\u6c88\u6bbf\u3055\u305b\u308b\u3053\u3068\u3067\u3001\u6c34\u74b0\u5883\u3092\u6d44\u5316\u3059\u308b\u80fd\u529b\u3092\u3082\u3064\u3068\u671f\u5f85\u3055\u308c\u307e\u3059\u3002<\/p>\n\n\n\n<p>\u672c\u5b66\u5468\u8fba\u306e\u6de1\u6c34\u74b0\u5883\u304b\u3089\u5358\u96e2\u3057\u305f\u65b0\u898f\u306e\u30de\u30f3\u30ac\u30f3\u9178\u5316\u771f\u83cc\u306f\u3001\u7523\u751f\u3057\u305fBMO\u3092\u83cc\u7cf8\u4e0a\u306b\u70b9\u5728\u3055\u305b\u308b\u30e6\u30cb\u30fc\u30af\u306a\u6027\u8cea\u3092\u3082\u3061\u3001\u3055\u3089\u306b\u3053\u308c\u3089\u306eBMO\u304c\u4ed6\u306e\u91cd\u91d1\u5c5e\u3092\u5438\u7740\u3059\u308b\u3053\u3068\u3092\u3001\u7269\u7406\u5b66\u7cfb\u7814\u7a76\u5ba4\u3068\u306e\u5354\u529b\u306b\u3088\u308a\u53ef\u8996\u5316\u3059\u308b\u3053\u3068\u306b\u6210\u529f\u3057\u307e\u3057\u305f\u3002<\/p>\n\n\n\n<p>Related research article:<br>Tsushima et al., <a rel=\"noreferrer noopener\" href=\"https:\/\/www.jstage.jst.go.jp\/article\/jsme2\/39\/2\/39_ME23102\/_article\" target=\"_blank\"><em>Microbes and Environments<\/em> (2024)<\/a><br><\/p>\n\n\n\n<p>Genome announcement:<br>Tsushima et al., <a href=\"https:\/\/journals.asm.org\/doi\/10.1128\/mra.00599-23\" target=\"_blank\" rel=\"noreferrer noopener\"><em>Microbiology Resource Announcements<\/em> (2023)<\/a><br><\/p>\n\n\n\n<p>Presentation:<br>Tsushima et al., <em>JSME<\/em>, Sapporo (2022)<\/p>\n\n\n\n<p><br><\/p>\n\n\n\n<h3 class=\"has-light-green-cyan-background-color has-background wp-block-heading\"><strong>Past Research Projects<\/strong><\/h3>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>Microbial ecology in the Canadian oil sands first large-scale end pit lake in Athabasca, Alberta<br><\/strong>(2017-2019, supervised by Prof. Lesley Warren, University of Toronto\/McMaster University)<\/p>\n<\/blockquote>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"379\" src=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/BML-1024x379.png\" alt=\"\" class=\"wp-image-225\" srcset=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/BML-1024x379.png 1024w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/BML-300x111.png 300w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/BML-768x284.png 768w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/BML.png 1720w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure><\/div>\n\n\n<p>Our combined metagenomic and geochemical survey revealed the presence of putative novel mixotrophic nitrifying-denitrifying bacteria, which dominantly inhabit the ammonia\/oxygen transition zone of the world-first oil sands mining pit lake in the Athabasca oil sands region (Alberta, Canada).<br>Collaborators: Jill Banfield, Lin-Xing Chen (UC Berkeley), Matt Lindsay, Joyce McBeth (Univ. Saskatchewan)<\/p>\n\n\n\n<p>\u4e16\u754c\u3067\u552f\u4e00\u306e\u30aa\u30a4\u30eb\u30b5\u30f3\u30c9\u63a1\u6398\u30d4\u30c3\u30c8\u6e56\uff08\u30ab\u30ca\u30c0\u30fb\u30a2\u30eb\u30d0\u30fc\u30bf\u5dde\uff09\u306b\u751f\u606f\u3059\u308b\u5fae\u751f\u7269\u7fa4\u96c6\u306b\u5bfe\u3057\u3066\u30e1\u30bf\u30b2\u30ce\u30e0\u89e3\u6790\u3092\u884c\u3044\u3001\u785d\u5316\u30fb\u8131\u7a92\u306e&#8221;\u4e8c\u5200\u6d41&#8221;\u3092\u3053\u306a\u3059\u65b0\u898f\u306e\u7d30\u83cc\u306e\u5b58\u5728\u3092\u63d0\u5531\u3057\u307e\u3057\u305f\u3002<\/p>\n\n\n\n<p>Related research article:<br>Jessen et al., <a href=\"https:\/\/www.mdpi.com\/2076-2607\/10\/3\/510\" target=\"_blank\" rel=\"noreferrer noopener\"><em>Microorganisms<\/em> (2022)<\/a><br>Mori et al., <a rel=\"noopener noreferrer\" href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmicb.2019.02435\/full\" target=\"_blank\"><em>Frontiers in Microbiology<\/em> (2019)<\/a><br>Chen et al., <a rel=\"noopener noreferrer\" href=\"https:\/\/msystems.asm.org\/content\/4\/5\/e00410-19\" target=\"_blank\"><em>mSystems<\/em> (2019)<\/a><\/p>\n\n\n\n<p>Presentation:<br>Mori et al., <em>ISME17<\/em>, Leipzig (2018)<br>\u3000\u3000\u3000<\/p>\n\n\n\n<p>\u3000\u3000\u3000<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>Discovery and characterization of <em>Ghiorsea<\/em>, a novel genus of Zetaproteobacteria<br><\/strong>(2015-2017, supervised by Dr. David Emerson, Bigelow Laboratory for Ocean Sciences)<\/p>\n<\/blockquote>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"345\" src=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/zeta-1024x345.png\" alt=\"\" class=\"wp-image-231\" srcset=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/zeta-1024x345.png 1024w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/zeta-300x101.png 300w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/zeta-768x259.png 768w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/zeta.png 1235w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure><\/div>\n\n\n<p>We isolated new genus of Zetaproteobacteria from deep ocean (Mid-Atlantic Ridge and Mariana back-arc), that can utilize molecular hydrogen as sole electron donor (in addition to ferrous iron). It is the first report of the hydrogen-oxidizing capability within the class Zetaproteobacteria.<br>Collaborators: Craig Moyer, Kevin Hager (Western Washington Univ.)<\/p>\n\n\n\n<p>\u9244(II)\u9178\u5316\u80fd\u306b\u52a0\u3048\u3066\u6c34\u7d20\u9178\u5316\u80fd\u3092\u6709\u3059\u308b\u30bc\u30fc\u30bf\u30d7\u30ed\u30c6\u30aa\u30d0\u30af\u30c6\u30ea\u30a2\u306e\u65b0\u5c5e\u3092\u6df1\u6d77\u304b\u3089\u767a\u898b\u30fb\u5358\u96e2\u3057\u3001\u8a73\u3057\u3044\u57f9\u990a\u8a66\u9a13\u3068\u30b2\u30ce\u30e0\u89e3\u6790\u3092\u884c\u3044\u307e\u3057\u305f\u3002<\/p>\n\n\n\n<p>Related research article:<br>Mori et al., <a rel=\"noopener noreferrer\" href=\"https:\/\/www.nature.com\/articles\/ismej2017132\" target=\"_blank\"><em>The ISME Journal<\/em> (2017)<\/a><br>\u3000\u3000\u3000<\/p>\n\n\n\n<p>\u3000\u3000\u3000<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>Fe-rich pelagic lake aggregates (&#8220;iron snow&#8221;) generated by the Fe-cycling bacterial team<br><\/strong>(2013-2017, supervised by Prof. Kirsten K\u00fcsel, Friedrich-Schiller-University Jena)<\/p>\n<\/blockquote>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"271\" src=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/ironsnow-1024x271.png\" alt=\"\" class=\"wp-image-240\" srcset=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/ironsnow-1024x271.png 1024w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/ironsnow-300x79.png 300w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/ironsnow-768x203.png 768w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/ironsnow.png 1427w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure><\/div>\n\n\n<p>Pelagic lake aggregates enriched with Fe-oxides (called <em>iron snow<\/em>) are formed by the simple bacterial community inhabiting in an acidic, Fe-polluted former lignite mining pit lake in Eastern Germany. These lake aggregates can be considered as a simplified model of bacterial interactions in the pelagic communities. We isolated a novel unique Fe-oxidizing bacterium <em>Acidithrix<\/em>, which plays a central role to form iron-rich aggregates. Additionally, potential chemical cross-talking, co-aggregation system evolved between <em>Acidithrix <\/em>and Fe-reducing <em>Acidiphilium<\/em> was revealed by our metabolomics study, which is a rare example of bacterial inter-species chemical communication.<br>Collaborators: Georg Pohnert, Nico Ueberschaar, Kai Uwe Totsche, Matthias H\u00e4ndel, J\u00fcrgen Popp, Nicolae Tarcea (FSU Jena), Thomas Neu (Helmholtz Centre UFZ)<\/p>\n\n\n\n<p>\u30c9\u30a4\u30c4\u6771\u90e8\u306e\u65e7\u8910\u70ad\u9271\u5c71\u30d4\u30c3\u30c8\u6e56\u306b\u304a\u3044\u3066\u9244\u30ea\u30c3\u30c1\u306a\u51dd\u96c6\u4f53\u3092\u5f62\u6210\u3059\u308b\u30e6\u30cb\u30fc\u30af\u306a\u9244\u9178\u5316\u7d30\u83cc<em>Acidithrix<\/em>\u3092\u5358\u96e2\u3057\u307e\u3057\u305f\u3002\u307e\u305f\u3001<em>Acidithrix<\/em>\u3068\u5171\u5b58\u3059\u308b\u9244\u9084\u5143\u7d30\u83cc<em>Acidiphilium<\/em>\u304c\u5316\u5b66\u7269\u8cea\u3092\u4ecb\u3057\u3066\u60c5\u5831\u4f1d\u9054\u3092\u3057\u3066\u304a\u308a\u3001\u5171\u51dd\u96c6\u3057\u3066\u3044\u308b\u73fe\u8c61\u3092\u30e1\u30bf\u30dc\u30ed\u30df\u30af\u30b9\u89e3\u6790\u306b\u3088\u308a\u660e\u3089\u304b\u306b\u3057\u307e\u3057\u305f\u3002\u3053\u308c\u306f\u3001\u7570\u7a2e\u7d30\u83cc\u9593\u3067\u306e\u5316\u5b66\u30b3\u30df\u30e5\u30cb\u30b1\u30fc\u30b7\u30e7\u30f3\u6a5f\u69cb\u3092\u5831\u544a\u3057\u305f\u5e0c\u5c11\u306a\u4f8b\u3068\u306a\u308a\u307e\u3057\u305f\u3002<\/p>\n\n\n\n<p>Related research article:<br>Mori et al., <a href=\"https:\/\/www.nature.com\/articles\/ismej2016186\" target=\"_blank\" rel=\"noopener noreferrer\"><em>The ISME Journal<\/em> (2017)<\/a><br>Mori et al., <a href=\"https:\/\/www.microbiologyresearch.org\/content\/journal\/micro\/10.1099\/mic.0.000205\" target=\"_blank\" rel=\"noopener noreferrer\"><em>Microbiology <\/em>(2016)<\/a><\/p>\n\n\n\n<p>Presentation:<br>Mori et al., <em>ISME16<\/em>, Montreal (2016)<br>Mori et al., <em>Goldschmidt2016<\/em>, Yokohama (2016)<br>Mori et al., <em>Gordon Research Conference, Applied and Environmental Microbiology<\/em>, Mount Holyoke (2015)<br>\u3000\u3000\u3000<\/p>\n\n\n\n<p>\u3000\u3000\u3000<\/p>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><strong>Streamer-forming algae-mineral-bacteria assemblages in heavy metal-polluted groundwater outflow<br><\/strong>(2013-2015, supervised by Prof. Kirsten K\u00fcsel, Friedrich-Schiller-University Jena)<\/p>\n<\/blockquote>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"321\" src=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/algae-1024x321.png\" alt=\"\" class=\"wp-image-246\" srcset=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/algae-1024x321.png 1024w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/algae-300x94.png 300w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/algae-768x241.png 768w, http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-content\/uploads\/2019\/11\/algae.png 1116w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure><\/div>\n\n\n<p>Conspicuous, streamer-forming microbial assemblages were observed in a former uranium-mining district in Eastern Germany. Our microbial community analyses and microscopic visualization revealed that the dominant Fe-oxidizing bacterium <em>Gallionella<\/em> were colonizing macroscopic green algae <em>Tribonema<\/em>, presumably utilizing algal exopolymer (i.e. EPS) to stick and dump the Fe-oxides.<br>Collaborator: Thomas Neu (Helmholtz Centre UFZ), Kai Uwe Totsche, Matthias H\u00e4ndel (FSU Jena)<\/p>\n\n\n\n<p>\u30c9\u30a4\u30c4\u6771\u90e8\u306e\u65e7\u30a6\u30e9\u30f3\u9271\u5c71\u3067\u306f\u9ad8\u6fc3\u5ea6\u306e\u91cd\u91d1\u5c5e\u3092\u542b\u3080\u5730\u4e0b\u6c34\u304c\u6ef2\u51fa\u3057\u3066\u304a\u308a\u3001\u305d\u3053\u3067\u6d3b\u767a\u306b\u751f\u80b2\u3057\u3066\u3044\u308b<em>Gallionella<\/em>\u5c5e\u306e\u9244\u9178\u5316\u7d30\u83cc\u306f\u591a\u7d30\u80de\u85fb\u985e<em>Tribonema<\/em>\u306b\u3079\u3063\u305f\u308a\u3068\u307e\u3068\u308f\u308a\u3064\u3044\u3066\u3044\u307e\u3057\u305f\u3002\u9855\u5fae\u93e1\u3067\u89b3\u5bdf\u3057\u305f\u3068\u3053\u308d\u3001\u85fb\u985e\u304c\u4f5c\u308b\u7d30\u80de\u5916\u591a\u7cd6(\u3044\u308f\u3086\u308bEPS)\u3092\u7d30\u83cc\u304c\u5229\u7528\u3057\u3001\u7523\u751f\u3057\u305f\u9178\u5316\u9244\u3092\u84c4\u7a4d\u3055\u305b\u3066\u3044\u308b\u3053\u3068\u3082\u793a\u5506\u3055\u308c\u307e\u3057\u305f\u3002<\/p>\n\n\n\n<p>Related research article:<br>Mori et al., <a href=\"https:\/\/www.biogeosciences.net\/12\/5277\/2015\/\" target=\"_blank\" rel=\"noopener noreferrer\"><em>Biogeosciences<\/em> (2015)<\/a><\/p>\n\n\n\n<p>Presentation:<br>Mori et al., <em>ISME15<\/em>, Seoul (2015)<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Current Research In the Mori Lab @YCU, several research projects in microbial ecology, microbial genomics, geomicrobiology, and bioremediation studies have got under way. Current Research Interests:(1) Petroleum hydrocarbon-degrading (soil\/marine) microbial assemblages(2) Interactions between marine microorganisms and plastic debris(3) Iron-\/manganese-oxidizing microorganisms in metal-rich groundwater outflow(4) Filterable (ultra-small) microorganisms in coastal environments \u4eca\u8208\u5473\u304c\u3042\u308b\u3053\u3068\uff1a(1) \u77f3\u6cb9\u7cfb\u70ad\u5316\u6c34\u7d20\u3092\u751f\u5206\u89e3\u3059\u308b\uff08\u571f\u58cc\/\u6d77\u6d0b\uff09\u5fae\u751f\u7269\u7fa4\u96c6(2) \u6d77\u6d0b\u5fae\u751f\u7269\u3068\u30d7\u30e9\u30b9\u30c1\u30c3\u30af\u306e\u95a2\u4fc2(3) \u6de1\u6c34\u74b0\u5883\u4e2d\u306e\u9244\/\u30de\u30f3\u30ac\u30f3\u9178\u5316\u5fae\u751f\u7269\u306e\u751f\u614b\u3068\u305d\u306e\u5fdc\u7528(4) \u9664\u83cc\u30d5\u30a3\u30eb\u30bf\u30fc\u3092\u901a\u904e\u3059\u308b\uff08\u8d85\u5fae\u5c0f\uff09\u6d77\u6d0b\u5fae\u751f\u7269\u3000\u3000\u3000 <a href=\"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori-research\/\" rel=\"nofollow\"><span class=\"sr-only\">Read more about Research overview &#8211; Dr. Jiro F. Mori<\/span>[&hellip;]<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-fullwidth.php","meta":{"footnotes":""},"class_list":["post-218","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/pages\/218","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/comments?post=218"}],"version-history":[{"count":70,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/pages\/218\/revisions"}],"predecessor-version":[{"id":1298,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/pages\/218\/revisions\/1298"}],"wp:attachment":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/wp-json\/wp\/v2\/media?parent=218"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}