{"id":18,"date":"2019-07-09T23:57:38","date_gmt":"2019-07-09T14:57:38","guid":{"rendered":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/en\/?page_id=18"},"modified":"2026-05-06T23:13:28","modified_gmt":"2026-05-06T14:13:28","slug":"publications","status":"publish","type":"page","link":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

Peer-reviewed research articles \/ \u67fb\u8aad\u4ed8\u304d\u5b66\u8853\u8ad6\u6587<\/strong><\/p>\n\n\n\n

2026<\/p>\n\n\n\n

Sato, M., Kanaly, R. A., and Mori, J. F.<\/strong><\/span> (2026) Genomic and transcriptomic insights into Achromobacter<\/em>–Sphingobium<\/em> co-colonization within polycyclic aromatic hydrocarbon-exposed bacterial communities. Microbiology<\/strong><\/em>, accepted. (corresponding)<\/strong><\/p>\n\n\n\n

2025<\/p>\n\n\n\n

Yanagita, H., Kanaly, R. A., and Mori, J. F.<\/strong><\/span> (2025) Transcriptomic profiling of Pseudomonas migulae<\/em> revealed gene regulatory properties during biodegradation of aromatic hydrocarbons under cold stress. Microbial Genomics<\/strong><\/em> 11(9), 001470<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Sakai, M., Mori, J. F.<\/strong><\/span>, and Kanaly, R. A. (2025) Utilization of the C9 aromatic hydrocarbon n<\/em>-propylbenzene by Sphingobium barthaii<\/em> KK22 and coexistence of multiple biodegradation pathways. Biodegradation<\/strong><\/em> 36, 54<\/a><\/p>\n\n\n\n

2024<\/p>\n\n\n\n

Abe, M., Sakai, M., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2024) Identification of a putative novel polycyclic aromatic hydrocarbon-biodegrading gene cluster in a marine Roseobacteraceae<\/em> bacterium Sagittula<\/em> sp. MA-2. Microbiology Spectrum<\/strong><\/em> 13, e01074-24<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Sakai, M., Mori, J. F.<\/strong><\/span>, and Kanaly, R. A. (2024) Assessment of bacterial biotransformation of alkylnaphthalene lubricating base oil component 1-butylnaphthalene by LC\/ESI-MS(\/MS). Chemosphere<\/strong><\/em> 364, 143269<\/a><\/p>\n\n\n\n

Tsushima, S., Nishi, Y., Suzuki, R., Tachibana, M., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2024) Formation of biogenic manganese oxide nodules on hyphae of a new fungal isolate of Periconia<\/em> that immobilizes aqueous copper. Microbes and Environments<\/strong><\/em> 39(2), ME23102<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

2023<\/p>\n\n\n\n

Abe, M., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2023) Genomic analysis of a marine alphaproteobacterium Sagittula<\/em> sp. strain MA-2 that carried eight plasmids. Marine Genomics<\/strong><\/em> 72, 101070<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Tsushima, S., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2023) Whole genome sequence of Periconia<\/em> sp. strain TS-2, an ascomycete fungus isolated from a freshwater outflow and capable of Mn(II) oxidation. Microbiology Resource Announcements<\/strong><\/em> 12, e00599-23<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Nemoto, Y., Ozawa, K., Mori, J. F.<\/span><\/strong>, and Kanaly, R. A. (2023) Nondesulfurizing benzothiophene biotransformation to hetero and homodimeric ortho<\/em>-substituted diaryl disulfides by the model PAH-degrading Sphingobium barthaii<\/em>. Biodegradation<\/strong><\/a> <\/a><\/strong><\/em>34, 215-233<\/a>.<\/a><\/strong><\/em><\/p>\n\n\n\n

2022<\/p>\n\n\n\n

Kayama, G., Kanaly, R. A., and Mori, J. F.<\/strong><\/span> (2022) Comprehensive genomic characterization of marine bacteria Thalassospira<\/em> spp. provides insights into their ecological roles in aromatic hydrocarbon-exposed environments. Microbiology Spectrum<\/strong><\/em> 10, e03149-22<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Sakai, M., Tomiyama, Y., Mori, J. F.<\/span><\/strong>, and Kanaly, R. A. (2022) Growth of Sphingobium barthaii<\/em> KK22 on 1-ethylnaphthalene reveals diverse oxidative transformations and a complex metabolite profile. International Biodeterioration & Biodegradation<\/strong><\/em> 175<\/a><\/p>\n\n\n\n

Kayama, G., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2022) Complete genome sequence of Thalassospira<\/em> sp. strain GO-4, a marine bacterium isolated from a phenanthrene-enriched bacterial consortium. Microbiology Resource Announcements<\/strong><\/em> 11, e00532-22<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Jessen, G. L., Chen, L-X., Mori, J. F.<\/span><\/strong>, Nelson, T. C., Slater, G. F., Lindsay, M. B. J., Banfield, J. F., and Warren, L. A. (2022) Alum addition triggers hypoxia in an engineered pit lake. Microorganisms<\/strong><\/em> 10(3), 510 (Special Issue “The Microbiology of Oil Sands Tailings”)<\/a><\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2022) Natural chromosome-chromid fusion across rRNA operons in a Burkholderiaceae bacterium. Microbiology Spectrum<\/strong><\/em> 10, e02225-21<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

2021<\/p>\n\n\n\n

Izawa, M., Sakai, M., Mori, J. F.<\/span><\/strong>, and Kanaly, R. A. (2021) Cometabolic benzo[a<\/em>]pyrene biotransformation by Sphingobium barthaii<\/em> KK22 proceeds through the kata-annelated ring and 1-pyrenecarboxylic acid to downstream products. Journal of Hazardous Materials Advances<\/strong><\/em> 4, 100018<\/a><\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong>, Nagai, M., and Kanaly, R. A. (2021) Complete genome sequence of Cupriavidus necator<\/em> KK10, an azaarene-degrading and polyhydroxyalkanoate-producing soil bacterium. Microbiology Resource Announcements<\/strong><\/em> 10, e00423-21<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Tomiyama, Y., Takeshita, T., Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2021) Functionalization of the model asphaltene 1-dodecylnaphthalene by Pseudomonas aeruginosa <\/em>KK6 through subterminal metabolism. Journal of Petroleum Science and Engineering<\/strong><\/em> 205, 108870<\/a><\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2021) Complete genome sequence of Sphingobium barthaii<\/em> KK22, a high-molecular-weight polycyclic aromatic hydrocarbon-degrading soil bacterium. Microbiology Resource Announcements<\/em><\/strong> 10, e01250-20<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

2020<\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2020) Multispecies diesel fuel biodegradation and niche formation are ignited by pioneer hydrocarbon-utilizing proteobacteria in a soil bacterial consortium. Applied and Environmental Microbiolo<\/a><\/strong><\/em>gy<\/strong><\/em> 87, e02268-20<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Camacho, D., Jessen, G. L., Mori, J. F.<\/strong><\/span>, Apte, S. C., Jarolimek, C., and Warren, L. A. (2020) Microbial succession signals the initiation of acidification in mining wastewaters. Mine Water and Environmen<\/a><\/em><\/strong>t<\/em><\/strong> 39, 669-683<\/a><\/p>\n\n\n\n

Maeda, A. H., Nishi, S., Hatada, Y., Ohta, Y., Misaka, K., Kunihiro, M., Mori, J. F.<\/strong><\/span>, and Kanaly, R. A. (2020) Chemical and genomic analyses of polycyclic aromatic hydrocarbon biodegradation in Sphingobium barthaii<\/em> KK22 reveals divergent pathways in soil sphingomonads. International Biodeterioration & <\/em>Biodegradation<\/em><\/strong> 151<\/a><\/p>\n\n\n\n

~2019<\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Chen, L-X., Jessen, G. L., Rudderham, S. B., McBeth, J. M., Lindsay, M. B. J., Slater, G. F., Banfield, J. F., and Warren, L. A. (2019) Putative mixotrophic nitrifying-denitrifying Gammaproteobacteria implicated in nitrogen cycling within the ammonia\/oxygen transition zone of an oil sands pit lake. Frontiers in Microbiology<\/strong><\/a><\/em> 10(2435)<\/a><\/p>\n\n\n\n

Chen, L-X., Zhao, Y-L., McMahon, K. D., Mori, J.<\/strong> F.<\/strong><\/span>, Jessen, G. L., Nelson, T. C., Warren, L. A., and Banfield, J. F. (2019) Wide distribution of phage that infect freshwater SAR11 bacteria. mSystems<\/em> <\/strong>4, e00410-19<\/a> “Editor’s pick” of the issue<\/strong><\/p>\n\n\n\n

Whaley-Martin, K. J., Jessen, G. L., Colenbrander-Nelson, T., Mori, J. F.<\/strong><\/span>, Apte, S. C., Jarolimek, C., and Warren, L. A. (2019) The potential role of Halothiobacillus<\/em> spp. in sulphur oxidation and acid generation in circum-neutral mine tailings reservoirs. Frontiers in Microbiology<\/a><\/em><\/strong>10(297)<\/a> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Scott, J. J., Hager, K. W., Moyer, C. L., K\u00fcsel, K., and Emerson, D. (2017) Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora<\/em>, gen. nov., sp. nov. The ISME Journal<\/a><\/em><\/strong> 11, 2624-2636<\/a> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Ueberschaar, N., Lu, S., Cooper, R. E., Pohnert, G., and K\u00fcsel, K. (2017) Sticking together: Inter-species aggregation of bacteria isolated from iron snow is controlled by chemical signaling. The ISME Journal<\/a><\/em><\/strong> 11, 1075-1086<\/a> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Lu, S., H\u00e4ndel, M., Neu, T. R., Iancu, V. V., Tarcea, N., Totsche, K. U., Popp, J., and K\u00fcsel, K. (2016) Schwertmannite formation at cell conjugations by a new filament-forming Fe(II)-oxidizing isolate affiliated with the novel genus Acidithrix<\/em>. Microbiology<\/a><\/em><\/strong> 162, 62-71<\/a> \u201cEditor\u2019s Choice\u201d of the issue<\/strong> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Neu, T. R., Lu, S., H\u00e4ndel, M., Totsche, K. U., and K\u00fcsel, K. (2015) Iron encrustations on filamentous algae colonized by Gallionella<\/em>-related bacteria in a metal-polluted freshwater stream. Biogeosciences<\/a><\/em><\/strong> 12, 5277-5289<\/a><\/p>\n\n\n\n

<\/p>\n\n\n\n


Other articles (non-peer-reviewed) \/ \u3061\u3087\u3063\u3068\u3057\u305f\u66f8\u304d\u7269<\/strong><\/p>\n\n\n\n

\u300c\u6d77\u5916\u7559\u5b66\uff1d\u3059\u3054\u3044\u300d\u304b\u3089\u3001\u4e00\u6b69\u8e0f\u307f\u51fa\u3059
\u65e5\u672c\u5fae\u751f\u7269\u751f\u614b\u5b66\u4f1a\u8a8c 2019\u5e74 34\u5dfb 2\u53f7 58-61<\/a><\/p>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

Peer-reviewed research articles \/ \u67fb\u8aad\u4ed8\u304d\u5b66\u8853\u8ad6\u6587 2026 Sato, M., Kanaly, R. A., and Mori, J. F. (2026) Genomic and transcriptomic insights into Achromobacter–Sphingobium co-colonization within polycyclic aromatic hydrocarbon-exposed bacterial communities. Microbiology, accepted. (corresponding) 2025 Yanagita, H., Kanaly, R. A., and Mori, J. F. (2025) Transcriptomic profiling of Pseudomonas migulae revealed gene regulatory properties during biodegradation of…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-fullwidth.php","meta":{"_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"","_kad_post_sidebar_id":"","_kad_post_content_style":"","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"footnotes":""},"class_list":["post-18","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages\/18","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/comments?post=18"}],"version-history":[{"count":17,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages\/18\/revisions"}],"predecessor-version":[{"id":422,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages\/18\/revisions\/422"}],"wp:attachment":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/media?parent=18"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}