{"id":18,"date":"2019-07-09T23:57:38","date_gmt":"2019-07-09T14:57:38","guid":{"rendered":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/en\/?page_id=18"},"modified":"2025-09-22T12:35:37","modified_gmt":"2025-09-22T03:35:37","slug":"publications","status":"publish","type":"page","link":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

Peer-reviewed research articles \/ \u67fb\u8aad\u4ed8\u304d\u5b66\u8853\u8ad6\u6587<\/strong><\/p>\n\n\n\n

2025<\/p>\n\n\n\n

Yanagita, H., Kanaly, R. A., and Mori, J. F.<\/strong><\/span> (2025) Transcriptomic profiling of Pseudomonas migulae<\/em> revealed gene regulatory properties during biodegradation of aromatic hydrocarbons under cold stress. Microbial Genomics<\/strong><\/em> 11(9), 001470<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Sakai, M., Mori, J. F.<\/strong><\/span>, and Kanaly, R. A. (2025) Utilization of the C9 aromatic hydrocarbon n<\/em>-propylbenzene by Sphingobium barthaii<\/em> KK22 and coexistence of multiple biodegradation pathways. Biodegradation<\/strong><\/em> 36, 54<\/a><\/p>\n\n\n\n

2024<\/p>\n\n\n\n

Abe, M., Sakai, M., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2024) Identification of a putative novel polycyclic aromatic hydrocarbon-biodegrading gene cluster in a marine Roseobacteraceae<\/em> bacterium Sagittula<\/em> sp. MA-2. Microbiology Spectrum<\/strong><\/em> 13, e01074-24<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Sakai, M., Mori, J. F.<\/strong><\/span>, and Kanaly, R. A. (2024) Assessment of bacterial biotransformation of alkylnaphthalene lubricating base oil component 1-butylnaphthalene by LC\/ESI-MS(\/MS). Chemosphere<\/strong><\/em> 364, 143269<\/a><\/p>\n\n\n\n

Tsushima, S., Nishi, Y., Suzuki, R., Tachibana, M., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2024) Formation of biogenic manganese oxide nodules on hyphae of a new fungal isolate of Periconia<\/em> that immobilizes aqueous copper. Microbes and Environments<\/strong><\/em> 39(2), ME23102<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

2023<\/p>\n\n\n\n

Abe, M., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2023) Genomic analysis of a marine alphaproteobacterium Sagittula<\/em> sp. strain MA-2 that carried eight plasmids. Marine Genomics<\/strong><\/em> 72, 101070<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Tsushima, S., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2023) Whole genome sequence of Periconia<\/em> sp. strain TS-2, an ascomycete fungus isolated from a freshwater outflow and capable of Mn(II) oxidation. Microbiology Resource Announcements<\/strong><\/em> 12, e00599-23<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Nemoto, Y., Ozawa, K., Mori, J. F.<\/span><\/strong>, and Kanaly, R. A. (2023) Nondesulfurizing benzothiophene biotransformation to hetero and homodimeric ortho<\/em>-substituted diaryl disulfides by the model PAH-degrading Sphingobium barthaii<\/em>. Biodegradation<\/strong><\/a> <\/a><\/strong><\/em>34, 215-233<\/a>.<\/a><\/strong><\/em><\/p>\n\n\n\n

2022<\/p>\n\n\n\n

Kayama, G., Kanaly, R. A., and Mori, J. F.<\/strong><\/span> (2022) Comprehensive genomic characterization of marine bacteria Thalassospira<\/em> spp. provides insights into their ecological roles in aromatic hydrocarbon-exposed environments. Microbiology Spectrum<\/strong><\/em> 10, e03149-22<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Sakai, M., Tomiyama, Y., Mori, J. F.<\/span><\/strong>, and Kanaly, R. A. (2022) Growth of Sphingobium barthaii<\/em> KK22 on 1-ethylnaphthalene reveals diverse oxidative transformations and a complex metabolite profile. International Biodeterioration & Biodegradation<\/strong><\/em> 175<\/a><\/p>\n\n\n\n

Kayama, G., Kanaly, R. A., and Mori, J. F.<\/span><\/strong> (2022) Complete genome sequence of Thalassospira<\/em> sp. strain GO-4, a marine bacterium isolated from a phenanthrene-enriched bacterial consortium. Microbiology Resource Announcements<\/strong><\/em> 11, e00532-22<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Jessen, G. L., Chen, L-X., Mori, J. F.<\/span><\/strong>, Nelson, T. C., Slater, G. F., Lindsay, M. B. J., Banfield, J. F., and Warren, L. A. (2022) Alum addition triggers hypoxia in an engineered pit lake. Microorganisms<\/strong><\/em> 10(3), 510 (Special Issue “The Microbiology of Oil Sands Tailings”)<\/a><\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2022) Natural chromosome-chromid fusion across rRNA operons in a Burkholderiaceae bacterium. Microbiology Spectrum<\/strong><\/em> 10, e02225-21<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

2021<\/p>\n\n\n\n

Izawa, M., Sakai, M., Mori, J. F.<\/span><\/strong>, and Kanaly, R. A. (2021) Cometabolic benzo[a<\/em>]pyrene biotransformation by Sphingobium barthaii<\/em> KK22 proceeds through the kata-annelated ring and 1-pyrenecarboxylic acid to downstream products. Journal of Hazardous Materials Advances<\/strong><\/em> 4, 100018<\/a><\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong>, Nagai, M., and Kanaly, R. A. (2021) Complete genome sequence of Cupriavidus necator<\/em> KK10, an azaarene-degrading and polyhydroxyalkanoate-producing soil bacterium. Microbiology Resource Announcements<\/strong><\/em> 10, e00423-21<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Tomiyama, Y., Takeshita, T., Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2021) Functionalization of the model asphaltene 1-dodecylnaphthalene by Pseudomonas aeruginosa <\/em>KK6 through subterminal metabolism. Journal of Petroleum Science and Engineering<\/strong><\/em> 205, 108870<\/a><\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2021) Complete genome sequence of Sphingobium barthaii<\/em> KK22, a high-molecular-weight polycyclic aromatic hydrocarbon-degrading soil bacterium. Microbiology Resource Announcements<\/em><\/strong> 10, e01250-20<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

2020<\/p>\n\n\n\n

Mori, J. F.<\/span><\/strong> and Kanaly, R. A. (2020) Multispecies diesel fuel biodegradation and niche formation are ignited by pioneer hydrocarbon-utilizing proteobacteria in a soil bacterial consortium. Applied and Environmental Microbiolo<\/a><\/strong><\/em>gy<\/strong><\/em> 87, e02268-20<\/a> (corresponding)<\/strong><\/p>\n\n\n\n

Camacho, D., Jessen, G. L., Mori, J. F.<\/strong><\/span>, Apte, S. C., Jarolimek, C., and Warren, L. A. (2020) Microbial succession signals the initiation of acidification in mining wastewaters. Mine Water and Environmen<\/a><\/em><\/strong>t<\/em><\/strong> 39, 669-683<\/a><\/p>\n\n\n\n

Maeda, A. H., Nishi, S., Hatada, Y., Ohta, Y., Misaka, K., Kunihiro, M., Mori, J. F.<\/strong><\/span>, and Kanaly, R. A. (2020) Chemical and genomic analyses of polycyclic aromatic hydrocarbon biodegradation in Sphingobium barthaii<\/em> KK22 reveals divergent pathways in soil sphingomonads. International Biodeterioration & <\/em>Biodegradation<\/em><\/strong> 151<\/a><\/p>\n\n\n\n

~2019<\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Chen, L-X., Jessen, G. L., Rudderham, S. B., McBeth, J. M., Lindsay, M. B. J., Slater, G. F., Banfield, J. F., and Warren, L. A. (2019) Putative mixotrophic nitrifying-denitrifying Gammaproteobacteria implicated in nitrogen cycling within the ammonia\/oxygen transition zone of an oil sands pit lake. Frontiers in Microbiology<\/strong><\/a><\/em> 10(2435)<\/a><\/p>\n\n\n\n

Chen, L-X., Zhao, Y-L., McMahon, K. D., Mori, J.<\/strong> F.<\/strong><\/span>, Jessen, G. L., Nelson, T. C., Warren, L. A., and Banfield, J. F. (2019) Wide distribution of phage that infect freshwater SAR11 bacteria. mSystems<\/em> <\/strong>4, e00410-19<\/a> “Editor’s pick” of the issue<\/strong><\/p>\n\n\n\n

Whaley-Martin, K. J., Jessen, G. L., Colenbrander-Nelson, T., Mori, J. F.<\/strong><\/span>, Apte, S. C., Jarolimek, C., and Warren, L. A. (2019) The potential role of Halothiobacillus<\/em> spp. in sulphur oxidation and acid generation in circum-neutral mine tailings reservoirs. Frontiers in Microbiology<\/a><\/em><\/strong>10(297)<\/a> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Scott, J. J., Hager, K. W., Moyer, C. L., K\u00fcsel, K., and Emerson, D. (2017) Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora<\/em>, gen. nov., sp. nov. The ISME Journal<\/a><\/em><\/strong> 11, 2624-2636<\/a> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Ueberschaar, N., Lu, S., Cooper, R. E., Pohnert, G., and K\u00fcsel, K. (2017) Sticking together: Inter-species aggregation of bacteria isolated from iron snow is controlled by chemical signaling. The ISME Journal<\/a><\/em><\/strong> 11, 1075-1086<\/a> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Lu, S., H\u00e4ndel, M., Neu, T. R., Iancu, V. V., Tarcea, N., Totsche, K. U., Popp, J., and K\u00fcsel, K. (2016) Schwertmannite formation at cell conjugations by a new filament-forming Fe(II)-oxidizing isolate affiliated with the novel genus Acidithrix<\/em>. Microbiology<\/a><\/em><\/strong> 162, 62-71<\/a> \u201cEditor\u2019s Choice\u201d of the issue<\/strong> <\/strong><\/p>\n\n\n\n

Mori, J. F.<\/strong><\/span>, Neu, T. R., Lu, S., H\u00e4ndel, M., Totsche, K. U., and K\u00fcsel, K. (2015) Iron encrustations on filamentous algae colonized by Gallionella<\/em>-related bacteria in a metal-polluted freshwater stream. Biogeosciences<\/a><\/em><\/strong> 12, 5277-5289<\/a><\/p>\n\n\n\n

<\/p>\n\n\n\n


Other articles (non-peer-reviewed) \/ \u3061\u3087\u3063\u3068\u3057\u305f\u66f8\u304d\u7269<\/strong><\/p>\n\n\n\n

\u300c\u6d77\u5916\u7559\u5b66\uff1d\u3059\u3054\u3044\u300d\u304b\u3089\u3001\u4e00\u6b69\u8e0f\u307f\u51fa\u3059
\u65e5\u672c\u5fae\u751f\u7269\u751f\u614b\u5b66\u4f1a\u8a8c 2019\u5e74 34\u5dfb 2\u53f7 58-61<\/a><\/p>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

Peer-reviewed research articles \/ \u67fb\u8aad\u4ed8\u304d\u5b66\u8853\u8ad6\u6587 2025 Yanagita, H., Kanaly, R. A., and Mori, J. F. (2025) Transcriptomic profiling of Pseudomonas migulae revealed gene regulatory properties during biodegradation of aromatic hydrocarbons under cold stress. Microbial Genomics 11(9), 001470 (corresponding) Sakai, M., Mori, J. F., and Kanaly, R. A. (2025) Utilization of the C9 aromatic hydrocarbon n-propylbenzene…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-fullwidth.php","meta":{"_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"","_kad_post_sidebar_id":"","_kad_post_content_style":"","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"footnotes":""},"class_list":["post-18","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages\/18","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/comments?post=18"}],"version-history":[{"count":15,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages\/18\/revisions"}],"predecessor-version":[{"id":360,"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/pages\/18\/revisions\/360"}],"wp:attachment":[{"href":"http:\/\/www-user.yokohama-cu.ac.jp\/~envmicro\/mori\/wp-json\/wp\/v2\/media?parent=18"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}